Package: bdvis 0.2.37

Vijay Barve

bdvis: Biodiversity Data Visualizations

Provides a set of functions to create basic visualizations to quickly preview different aspects of biodiversity information such as inventory completeness, extent of coverage (taxonomic, temporal and geographic), gaps and biases. Barve & Otegui (2016) <doi:10.1093/bioinformatics/btw333>.

Authors:Vijay Barve [aut, cre], Javier Otegui [aut]

bdvis_0.2.37.tar.gz
bdvis_0.2.37.zip(r-4.5)bdvis_0.2.37.zip(r-4.4)bdvis_0.2.37.zip(r-4.3)
bdvis_0.2.37.tgz(r-4.4-any)bdvis_0.2.37.tgz(r-4.3-any)
bdvis_0.2.37.tar.gz(r-4.5-noble)bdvis_0.2.37.tar.gz(r-4.4-noble)
bdvis_0.2.37.tgz(r-4.4-emscripten)bdvis_0.2.37.tgz(r-4.3-emscripten)
bdvis.pdf |bdvis.html✨
bdvis/json (API)
NEWS

# Install 'bdvis' in R:

install.packages('bdvis', repos = c('https://vijaybarve.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/vijaybarve/bdvis/issues

On CRAN:

biodiversity-data-visualizations

4.91 score 28 stars 29 scripts 207 downloads 12 exports 150 dependencies

Last updated 11 months agofrom:66ab8957f2. Checks:OK: 5 NOTE: 2. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Nov 02 2024
R-4.5-win	NOTE	Oct 03 2024
R-4.5-linux	NOTE	Nov 02 2024
R-4.4-win	OK	Oct 03 2024
R-4.4-mac	OK	Oct 03 2024
R-4.3-win	OK	Oct 03 2024
R-4.3-mac	OK	Oct 03 2024

Exports:bdcalendarheat bdcomplete bdsummary bdwebmap chronohorogram distrigraph format_bdvis getcellid gettaxo mapgrid taxotree tempolar

Dependencies:ape askpass assertthat backports base64enc bit bit64 blob bslib cachem checkmate chron class classInt cli clipr cluster codetools colorspace commonmark conditionz cpp11 crayon crul curl data.table DBI digest dplyr e1071 evaluate fansi farver fastmap fastmatch fontawesome foreach foreign Formula fs generics ggplot2 glue gridBase gridExtra gsubfn gtable highr Hmisc hms htmlTable htmltools htmlwidgets httpcode httpuv httr igraph isoband iterators jquerylib jsonlite KernSmooth knitr labeling later lattice lazyeval lifecycle magrittr maps MASS Matrix memoise mgcv mime munsell natserv nlme nnet openssl pbapply phangorn pillar pkgconfig plogr plotrix plyr prettyunits progress promises proto proxy purrr quadprog R6 rappdirs ratelimitr RColorBrewer Rcpp readr rentrez rex ritis rlang rmarkdown rncl rotl rpart rredlist RSQLite rstudioapi s2 sass scales sf shiny solrium sourcetools sqldf stringi stringr sys taxize tibble tidyselect tinytex treemap triebeard tzdb units urltools utf8 uuid vctrs viridis viridisLite vroom WikidataQueryServiceR WikidataR WikipediR wikitaxa withr wk worrms xfun XML xml2 xtable yaml zoo

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Calendar heat map of biodiversity data	bdcalendarheat
Computes completeness values of the dataset	bdcomplete
Provides summary of biodiversity data	bdsummary
bdvis: Biodiversity Data Visualizations	bdvis
(Deprecated) Interactive web page based map of records	bdwebmap
Draws a chronohorogram of records	chronohorogram
Distribution graphs	distrigraph
Prepare data frame for flagging functions	format_bdvis
Assign GBIF style degree cell ids and generate custom grid cell ids	getcellid
Get higher taxonomy data	gettaxo
Maps the data points on the map in grid format	mapgrid
Treemap based on taxonomic hierarchy of records	taxotree
Polar plot of temporal data	tempolar